Name: Eco-Evolutionary Processes in Context: a Statistical Physics Approach
Start: 2025-07-07T09:00:00+02:00
End: 2025-07-25T19:00:00+02:00
Location: Albano Building 3

Monday 7 July 2025

13:15 Registration
Registration
13:15 - 14:00
Room: Floor 6
14:00 Introduction - Fernanda Pinheiro
Introduction
- Fernanda Pinheiro
14:00 - 14:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
14:30 How do single bacterial cells think? - Erik Van Nimwegen
How do single bacterial cells think?
- Erik Van Nimwegen
14:30 - 15:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:15 Break
Break
15:15 - 15:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:30 Evolution of resource investment and behavior in motile bacteria - Victor Sourjik
Evolution of resource investment and behavior in motile bacteria
- Victor Sourjik
15:30 - 16:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Tuesday 8 July 2025
10:15 Physiological constraints on long-term laboratory evolution - Matt Scott
Physiological constraints on long-term laboratory evolution
- Matt Scott
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Evolution of error correction through a need for speed - Arvind Murugan
Evolution of error correction through a need for speed
- Arvind Murugan
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 12:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:15 Emergent time scales of epistasis in protein evolution - Francesco Zamponi
Emergent time scales of epistasis in protein evolution
- Francesco Zamponi
12:15 - 13:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Wednesday 9 July 2025
10:15 Global epistasis and some side effects of adaptation - Sergey Kryazhimsky
Global epistasis and some side effects of adaptation
- Sergey Kryazhimsky
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Contingency and selection in mitochondrial genome dynamics - Sid Goyal
Contingency and selection in mitochondrial genome dynamics
- Sid Goyal
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 12:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:15

12:15 - 12:45
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:45 Break
Break
12:45 - 15:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)

15:00

15:00 - 16:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)

16:30 BBQ
BBQ
16:30 - 18:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Thursday 10 July 2025
10:15 Competition at the front of expanding populations - Mehran Kardar
Competition at the front of expanding populations
- Mehran Kardar
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Physiological heterogeneity of microbes and the fate of treatment: predicting persistence and recurrence under phage and antibiotic pressure - Somenath Bakshi
Physiological heterogeneity of microbes and the fate of treatment: predicting persistence and recurrence under phage and antibiotic pressure
- Somenath Bakshi
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 15:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:00 Nordita Colloquium (and Fika) Viruses and us: the evolution of an ecosystem - Michael Lässig
Nordita Colloquium (and Fika) Viruses and us: the evolution of an ecosystem
- Michael Lässig
15:00 - 16:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Friday 11 July 2025
10:15 Evolution of excitable cells - Jose Davila-Velderrain
Evolution of excitable cells
- Jose Davila-Velderrain
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Just like us: hungry bacteria under stress - Fernanda Pinheiro
Just like us: hungry bacteria under stress
- Fernanda Pinheiro
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Saturday 12 July 2025
Sunday 13 July 2025

Monday 14 July 2025
14:00 Introduction - Fernanda Pinheiro
Introduction
- Fernanda Pinheiro
14:00 - 14:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
14:30 Physical constraints on antibody evolvability - Shenshen Wang
Physical constraints on antibody evolvability
- Shenshen Wang
14:30 - 15:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:15 Break
Break
15:15 - 15:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:30 Dynamics of adaptation of E. coli in the laboratory - Olivier Tenaillon
Dynamics of adaptation of E. coli in the laboratory
- Olivier Tenaillon
15:30 - 16:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Tuesday 15 July 2025
10:15 Flow in the digestive tract: bacterial population dynamics, evolution, and interaction with the immune system - Claude Loverdo
Flow in the digestive tract: bacterial population dynamics, evolution, and interaction with the immune system
- Claude Loverdo
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 TBD - Ben Greenbaum
TBD
- Ben Greenbaum
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Expanding the space of self-reproducing RNA using generative models - Martin Weigt
Expanding the space of self-reproducing RNA using generative models
- Martin Weigt
12:00 - 12:45
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Wednesday 16 July 2025
10:15 Evolutionary emergence of cooperativity in the game of Prisoner's Dilemma - Alexandre Morozov
Evolutionary emergence of cooperativity in the game of Prisoner's Dilemma
- Alexandre Morozov
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Population ecology of T cell compartmentalization and antigen specificity - Andreas Meyer
Population ecology of T cell compartmentalization and antigen specificity
- Andreas Meyer
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 12:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:15 Trainee flash talk
Trainee flash talk
12:15 - 12:45
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:45 Break
Break
12:45 - 15:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)

15:00

15:00 - 16:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)

16:30 BBQ
BBQ
16:30 - 18:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Thursday 17 July 2025
10:15 Design principles of the killer T-cell response - Armita Nourmohammad
Design principles of the killer T-cell response
- Armita Nourmohammad
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Origin of eco-evolutionary processes in context of physics [1] - Guy Bunin Olivier Rivoire
Origin of eco-evolutionary processes in context of physics [1]
- Guy Bunin
- Olivier Rivoire
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 12:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:15 Origin of eco-evolutionary processes in context of physics [2] - Olivier Rivoire Guy Bunin
Origin of eco-evolutionary processes in context of physics [2]
- Olivier Rivoire
- Guy Bunin
12:15 - 13:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Friday 18 July 2025
10:15 Toward phylodynamic models with interactions for quantitative immunology - William DeWitt
Toward phylodynamic models with interactions for quantitative immunology
- William DeWitt
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Impact of complex spatial population structures on biological evolution - Anne-Florance Bitbol
Impact of complex spatial population structures on biological evolution
- Anne-Florance Bitbol
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Saturday 19 July 2025
Sunday 20 July 2025

Monday 21 July 2025
14:00 Introduction - Fernanda Pinheiro
Introduction
- Fernanda Pinheiro
14:00 - 14:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
14:30 Convergence in immune repertoires - Aleksandra Walczak
Convergence in immune repertoires
- Aleksandra Walczak
14:30 - 15:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:15 Break
Break
15:15 - 15:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
15:30 Understanding the Drivers of Antibiotic Treatment Failure: Canonical and Noncanonical Mechanisms - Erdal Toprak
Understanding the Drivers of Antibiotic Treatment Failure: Canonical and Noncanonical Mechanisms
- Erdal Toprak
15:30 - 16:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Tuesday 22 July 2025
10:15 Bacterial responses to antibiotic stress: Resistance, tolerance and resilience - Joachim Krug
Bacterial responses to antibiotic stress: Resistance, tolerance and resilience
- Joachim Krug
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Memory durability and representation of the immune system - John Tsang
Memory durability and representation of the immune system
- John Tsang
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Wednesday 23 July 2025
10:15 Viral evolution in antigenic and real spaces - Thierry Mora
Viral evolution in antigenic and real spaces
- Thierry Mora
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Higher-Order Interactions, Fitness Landscapes, Stability Measures, and Antibiotic Resistance - Van Savage
Higher-Order Interactions, Fitness Landscapes, Stability Measures, and Antibiotic Resistance
- Van Savage
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
12:00 Break
Break
12:00 - 12:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:15

12:15 - 12:45
Room: Albano 3: 4205 - SU Conference Room (40 seats)

12:45 Break
Break
12:45 - 15:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)

15:00

15:00 - 16:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)

16:30 BBQ
BBQ
16:30 - 18:30
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Thursday 24 July 2025
10:15 Resilience of respiratory pathogens after COVID-19 - Sarah Cobey
Resilience of respiratory pathogens after COVID-19
- Sarah Cobey
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Temporal Evolution of TCR Repertoires in Response to Antigen Exposure - Asya Minervina
Temporal Evolution of TCR Repertoires in Response to Antigen Exposure
- Asya Minervina
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
Friday 25 July 2025
10:15 TCR overlap across patients and tissues reveal tissue-specific selection effects - Yuval Elhanati
TCR overlap across patients and tissues reveal tissue-specific selection effects
- Yuval Elhanati
10:15 - 11:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:00 Break
Break
11:00 - 11:15
Room: Albano 3: 4205 - SU Conference Room (40 seats)
11:15 Reverse Epitope Discovery: Identifying Antigens from TCR Repertoires - Misha Pogorelyy
Reverse Epitope Discovery: Identifying Antigens from TCR Repertoires
- Misha Pogorelyy
11:15 - 12:00
Room: Albano 3: 4205 - SU Conference Room (40 seats)

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