16 April 2012 to 11 May 2012
Nordita
Europe/Stockholm timezone

Relevance learning in the analysis of biomedical data

7 May 2012, 14:00
1h
132:028 (Nordita)

132:028

Nordita

Speaker

Michael Biehl (Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen)

Description

A brief introduction to the distance based analysis and classification of multi-dimensional data is given. The popular Learning Vector Quantization (LVQ) will serve as the main example in this talk. A key issue in LVQ and many related methods is the choice of a suitable similarity or distance measure. So-called relevance learning schemes employ parameterized distance measures which are optimized in a data-driven training process. The recently introduced Matrix Relevance LVQ, based on generalized Euclidean distances, will be discussed in greater detail. Matrix Relevance Learning and Divergence based LVQ are illustrated in terms of a number of real world applications from the biomedical domain. Examples include the diagnosis of Acute Myeloid Leukaemia based on flow cytometry and the detection of malignancy in adrenal tumors from steroid metabolomics data. Application examples illustrate how relevance learning can be used for efficient multivariate analysis and classification, for the identification of most relevant biomarkers, and for the visualization of complex, labelled data sets.

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